| First Authors | Stephan Daetwyler |
|---|---|
| Authors | Stephan Daetwyler, Ulrik Günther, Carl D. Modes, Kyle Harrington, Jan Huisken |
| Corresponding Authors | Kyle Harrington, Jan Huisken |
| Last Authors | Jan Huisken |
| Journal Name | Development (Cambridge, England) (Development) |
| Volume | 146 |
| Issue | 6 |
| Article Number | dev173757 |
| Open Access | true |
| Print Publication Date | 2019-03-21 |
| Online Publication Date | |
| Abstract | To quantitatively understand biological processes that occur over many hours or days, it is desirable to image multiple samples simultaneously, and automatically process and analyse the resulting datasets. Here, we present a complete multi-sample preparation, imaging, processing and analysis workflow to determine the development of the vascular volume in zebrafish. Up to five live embryos were mounted and imaged simultaneously over several days using selective plane illumination microscopy (SPIM). The resulting large imagery dataset of several terabytes was processed in an automated manner on a high-performance computer cluster and segmented using a novel segmentation approach that uses images of red blood cells as training data. This analysis yielded a precise quantification of growth characteristics of the whole vascular network, head vasculature and tail vasculature over development. Our multi-sample platform demonstrates effective upgrades to conventional single-sample imaging platforms and paves the way for diverse quantitative long-term imaging studies. |
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| Affiliated With | CSBD, Huisken, Modes, Postdoc first author, Postdoc first male, Postdocs |
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| Acknowledged Services | Computer Department, Biomedical Services, Fish Facility |
| Publication Status | Published |
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| DOI | 10.1242/dev.173757 |
| PubMed ID | 30824551 |
| WebOfScience Link | WOS:000462859300012 |
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| Display Publisher Download Only | false |
| Visible On MPI-CBG Website | true |
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| Created By | thuem |
| Added Date | 2019-03-08 |
| Last Edited By | herbst |
| Last Edited Date | 2022-06-15 13:56:22.668 |
| Library ID | 7354 |
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| Entry Complete | true |
| eDoc Compliant | true |
| Include in Edoc Report | true |
| In Pure | false |
| Ready for eDoc Export | false |
| Author Affiliations Complete | false |
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